Mercurial > repos > galaxy-australia > gtdbtk_classify_wf

annotate tool-data/gtdbtk_database.loc.sample @ 0:aaa924525210 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
author galaxy-australia
date Mon, 19 Dec 2022 07:03:08 +0000
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aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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1 # This is a sample file distributed with Galaxy that enables tools
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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2 # to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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3 # file has this format (longer white space characters are TAB characters):
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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4 #
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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5 # <unique_build_id> <display_name> <directory_path>
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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6 #
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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7 # So, for example, if you have the gtdbtk 202 stored in
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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8 # /depot/data2/galaxy/gtdbtk/202/,
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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9 # then the gtdbtk_databases.loc entry would look like this:
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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10 #
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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11 # release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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12 #
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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13 # and your /depot/data2/galaxy/gtdbtk/release202 directory
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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14 # would contain GTDB-Tk database files for release 202, sommething like this:
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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15 #
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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16 #drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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17 #-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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18 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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19 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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20 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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21 #drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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22 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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23 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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24 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/
aaa924525210 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit b03f4ddae33360b4977576fa08a1529b8b008557
galaxy-australia
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25 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/