Mercurial > repos > fubar > rgrnastar_203e

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author fubar
date Fri, 09 Aug 2013 05:13:04 -0400
parents f13499e0de61
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# automate their generation f
# from existing fasta genomes
INDEXROOT=/data/ucsc
# fix that
for genome in hg19 hg18 mm9 mm10 rn4 rn5
do
  TARGET=${INDEXROOT}/${genome}/rnastar
  mkdir -p $TARGET
  cd $TARGET
  STAR --runMode genomeGenerate --genomeDir $TARGET --genomeFastaFiles ${TARGET}/$genome.fa --runThreadN 4
done