Mercurial > repos > fubar > rgrnastar_203e

annotate prepStar.sh @ 3:00ab5d9c061f draft

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author fubar
date Fri, 09 Aug 2013 05:13:04 -0400
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1 # automate their generation f
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2 # from existing fasta genomes
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3 INDEXROOT=/data/ucsc
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4 # fix that
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5 for genome in hg19 hg18 mm9 mm10 rn4 rn5
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6 do
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7 TARGET=${INDEXROOT}/${genome}/rnastar
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8 mkdir -p $TARGET
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9 cd $TARGET
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10 STAR --runMode genomeGenerate --genomeDir $TARGET --genomeFastaFiles ${TARGET}/$genome.fa --runThreadN 4
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11 done
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