Mercurial > repos > fubar > htseq_bams_to_count_matrix

annotate test-data/generatetest.sh @ 49:c57e63d1a9d2 draft

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working test. first upload
author fubar
date Fri, 02 Jan 2015 03:32:39 -0500
parents 390cb852aae7
children 0edc994d4021
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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43
390cb852aae7 Uploaded
fubar
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1 #python ../htseqsams2mx.py -g rn4_chr20_100k.gtf -o test.xls --samf "'rn4chr20test1.bam','col1'" --samf "'rn4chr20test2.bam','col2'"
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c57e63d1a9d2 working test. first upload
fubar
parents: 43
diff changeset
2 python ../htseqsams2mx.py -g rn4_chr20_100k.gtf -o htseqsams2mx_test1_out.xls --samf "'rn4chr20test1.bam','test1','bam','rn4chr20test1.bai'" --samf "'rn4chr20test2.bam','test2','bam','rn4chr20test2.bai'"
c57e63d1a9d2 working test. first upload
fubar
parents: 43
diff changeset
3