Mercurial > repos > fubar > edger_test

view rgedgeR/tool_dependencies.xml~ @ 26:db24a3130845 draft

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author fubar
date Wed, 12 Jun 2013 19:58:03 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="r3" version="3.0.1">
        <repository changeset_revision="8dcdf371a760" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
    </package>
    <package name="biocbasics" version="2.12">
        <install version="1.0"> 
            <actions>
                <action type="set_environment_for_install">
                      <package name="r3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
                            <repository name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
                        </package>
                    
                </action>
                <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action>
            </actions>
        </install>
        <readme>Installs some basic bioc packages for the edgeR tool

       </readme>
    </package>
</tool_dependency>