Mercurial > repos > fubar > edger_test

diff rgedgeR/tool_dependencies.xml~ @ 26:db24a3130845 draft

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author fubar
date Wed, 12 Jun 2013 19:58:03 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rgedgeR/tool_dependencies.xml~	Wed Jun 12 19:58:03 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="r3" version="3.0.1">
+        <repository changeset_revision="8dcdf371a760" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="biocbasics" version="2.12">
+        <install version="1.0"> 
+            <actions>
+                <action type="set_environment_for_install">
+                      <package name="r3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1">
+                            <repository name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+                        </package>
+                    
+                </action>
+                <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action>
+            </actions>
+        </install>
+        <readme>Installs some basic bioc packages for the edgeR tool
+
+       </readme>
+    </package>
+</tool_dependency>