Mercurial > repos > eschen42 > mqppep_preproc

diff MaxQuantProcessingScript.R @ 33:872a0f9860ff draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 5a40fd5ab46727e07c20348f194813b69d582d24
author eschen42
date Mon, 27 Mar 2023 20:56:35 +0000
parents 072fe8228dfa
children
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--- a/MaxQuantProcessingScript.R	Tue Feb 14 15:20:28 2023 +0000
+++ b/MaxQuantProcessingScript.R	Mon Mar 27 20:56:35 2023 +0000
@@ -368,6 +368,8 @@
 local_prob_cutoff <- args$localProbCutoff
 enriched <- args$enriched
 collapse_fn <- args$collapse_func
+if (collapse_fn == "average")
+  collapse_fn <- "mean"
 
 ### EXTRACT PARAMETERS from arguments end ------------------------------------