Mercurial > repos > eschen42 > mqppep_preproc

comparison MaxQuantProcessingScript.R @ 33:872a0f9860ff draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 5a40fd5ab46727e07c20348f194813b69d582d24
author eschen42
date Mon, 27 Mar 2023 20:56:35 +0000
parents 072fe8228dfa
children
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32:072fe8228dfa 33:872a0f9860ff
366 loc_prob_cutoff_graph_fn_svg <- args$locProbCutoffGraph_svg 366 loc_prob_cutoff_graph_fn_svg <- args$locProbCutoffGraph_svg
367 367
368 local_prob_cutoff <- args$localProbCutoff 368 local_prob_cutoff <- args$localProbCutoff
369 enriched <- args$enriched 369 enriched <- args$enriched
370 collapse_fn <- args$collapse_func 370 collapse_fn <- args$collapse_func
371 if (collapse_fn == "average")
372 collapse_fn <- "mean"
371 373
372 ### EXTRACT PARAMETERS from arguments end ------------------------------------ 374 ### EXTRACT PARAMETERS from arguments end ------------------------------------
373 375
374 376
375 # Proteomics Quality Control for MaxQuant Results 377 # Proteomics Quality Control for MaxQuant Results