Mercurial > repos > eschen42 > mqppep_anova

annotate macros.xml @ 22:61adb8801b73 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
author eschen42
date Thu, 30 Jun 2022 16:16:32 +0000
parents f3deca1a3c84
children f9cd87ac8006
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c1403d18c189 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit bb6c941be50db4c0719efdeaa904d7cb7aa1d182"
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1 <macros>
22
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2 <token name="@TOOL_VERSION@">0.1.13</token>
0
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <xml name="requirements">
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5 <requirements>
17
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6 <requirement type="package" version="1.56.0" >bioconductor-preprocesscore</requirement>
22
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7 <requirement type="package" version="1.22.2" >numpy</requirement>
17
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8 <requirement type="package" version="0.3.3" >openblas</requirement>
22
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9 <requirement type="package" version="1.4.1" >pandas</requirement>
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10 <requirement type="package" version="1.64" >perl-dbd-sqlite</requirement>
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11 <requirement type="package" version="5.26.2" >perl</requirement>
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12 <requirement type="package" version="1.4.0" >pyahocorasick</requirement>
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13 <requirement type="package" version="3.9.10" >python</requirement>
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14 <requirement type="package" version="1.14.2" >r-data.table</requirement>
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15 <requirement type="package" version="1.1.2" >r-dbi</requirement>
17
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16 <requirement type="package" version="3.3.5" >r-ggplot2</requirement>
22
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17 <requirement type="package" version="3.1.3" >r-gplots</requirement>
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18 <requirement type="package" version="0.9.4" >r-latex2exp</requirement>
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19 <requirement type="package" version="1.7.1" >r-optparse</requirement>
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20 <requirement type="package" version="1.4.4" >r-reshape2</requirement>
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21 <requirement type="package" version="2.11" >r-rmarkdown</requirement>
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22 <requirement type="package" version="2.2.8" >r-rsqlite</requirement>
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23 <requirement type="package" version="0.4.0" >r-sass</requirement>
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24 <requirement type="package" version="0.4_11" >r-sqldf</requirement>
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25 <requirement type="package" version="1.4.0" >r-stringr</requirement>
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26 <requirement type="package" version="0.37" >r-tinytex</requirement>
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27 <requirement type="package" version="0.3.7" >r-vioplot</requirement>
7
d728198f1ba5 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 9a0fa6d0f9aadc069a5551a54da6daf307885637"
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28 <!--
15
2c5f1a2fe16a "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 96659062ea07ac43d139746b0d119f1ee020f9cd"
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29 It would be nice to use conda-forge/texlive-core rather than r-tinytex because the
2c5f1a2fe16a "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 96659062ea07ac43d139746b0d119f1ee020f9cd"
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30 former installs texlive when the package is built, but issue 23 blocked PDF-creation.
2c5f1a2fe16a "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 96659062ea07ac43d139746b0d119f1ee020f9cd"
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31 Also, texlive-core also gave pango font errors (output had missing symbols replaced
2c5f1a2fe16a "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 96659062ea07ac43d139746b0d119f1ee020f9cd"
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32 with boxes) unless I specified the build as well as the version when building a
2c5f1a2fe16a "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 96659062ea07ac43d139746b0d119f1ee020f9cd"
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33 conda environment, e.g.: texlive-core=20210325=h97429d4_0
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34 -->
d728198f1ba5 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 9a0fa6d0f9aadc069a5551a54da6daf307885637"
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35 </requirements>
22
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36 <!-- I specified the versions above because it takes a VERY long time to search for package versions when they are not omitted; also, version numbers should lead to reproducible behavior. Contrast execution times of this (about 18 seconds):
61adb8801b73 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
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37 echo n | time conda create -n mqppep_ver -c conda-forge -c bioconda \
61adb8801b73 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
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38 bioconductor-preprocesscore=1.56.0 \
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39 numpy=1.22.2 \
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40 openblas=0.3.3 \
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41 pandas=1.4.1 \
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42 perl-dbd-sqlite=1.64 \
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43 perl-dbd-sqlite=1.64 \
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44 perl=5.26.2 \
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45 pyahocorasick=1.4.0 \
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46 python=3.9.10 \
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47 r-data.table=1.14.2 \
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48 r-dbi=1.1.2 \
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49 r-ggplot2=3.3.5 \
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50 r-gplots=3.1.3 \
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51 r-latex2exp=0.9.4 \
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52 r-optparse=1.7.1 \
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53 r-reshape2=1.4.4 \
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54 r-rmarkdown=2.11 \
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55 r-rsqlite=2.2.8 \
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56 r-sass=0.4.0 \
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57 r-sqldf=0.4_11 \
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58 r-stringr=1.4.0 \
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59 r-tinytex=0.37 \
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60 r-vioplot=0.3.7
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61 with this (42 or more seconds):
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62 echo n | time conda create -n mqppep_nover -c conda-forge -c bioconda \
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63 bioconductor-preprocesscore= \
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64 numpy \
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65 openblas=0.3.3 \
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66 pandas \
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67 perl \
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68 perl-dbd-sqlite \
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69 perl-dbd-sqlite \
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70 pyahocorasick \
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71 python \
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72 r-data.table \
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73 r-dbi \
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74 r-ggplot2 \
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75 r-gplots \
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76 r-latex2exp \
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77 r-optparse \
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78 r-reshape2 \
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79 r-rmarkdown \
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80 r-rsqlite \
61adb8801b73 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
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81 r-sass \
61adb8801b73 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
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82 r-sqldf \
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83 r-stringr \
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84 r-tinytex \
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85 r-vioplot
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86
61adb8801b73 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 0c7ca054e77e042c8a584c9903073da064df7d8b
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87 -->
7
d728198f1ba5 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 9a0fa6d0f9aadc069a5551a54da6daf307885637"
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88 </xml>
0
c1403d18c189 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit bb6c941be50db4c0719efdeaa904d7cb7aa1d182"
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89 </macros>