Mercurial > repos > elixir-it > covacs_variant_recalibrator

diff covacs_VariantRecalibrator.xml @ 10:2a59f20b097f draft default tip

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author elixir-it
date Wed, 02 Oct 2019 04:31:44 -0400
parents 3b3475d221a4
children
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--- a/covacs_VariantRecalibrator.xml	Tue Nov 20 09:42:02 2018 -0500
+++ b/covacs_VariantRecalibrator.xml	Wed Oct 02 04:31:44 2019 -0400
@@ -10,7 +10,7 @@
   <command>
     <![CDATA[
 	### call the .sh to untar the package 
-        sh $__tool_directory__/mv_untar_gatk.sh &&
+	bash $__tool_directory__/mv_untar_gatk.sh &> $log &&
 	
 	##sym link to run GATK
 	 #if $bed_source.bed_source_selector == "history" and $bed_source.bed_history