Mercurial > repos > elixir-it > covacs_variant_recalibrator

comparison covacs_VariantRecalibrator.xml @ 10:2a59f20b097f draft default tip

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author elixir-it
date Wed, 02 Oct 2019 04:31:44 -0400
parents 3b3475d221a4
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9:18481dd04f37 10:2a59f20b097f
8 <requirement type="package" version="3.8" >gatk</requirement> 8 <requirement type="package" version="3.8" >gatk</requirement>
9 </requirements> 9 </requirements>
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 ### call the .sh to untar the package 12 ### call the .sh to untar the package
13 sh $__tool_directory__/mv_untar_gatk.sh && 13 bash $__tool_directory__/mv_untar_gatk.sh &> $log &&
14 14
15 ##sym link to run GATK 15 ##sym link to run GATK
16 #if $bed_source.bed_source_selector == "history" and $bed_source.bed_history 16 #if $bed_source.bed_source_selector == "history" and $bed_source.bed_history
17 ln -s $bed_source.bed_history region.bed && 17 ln -s $bed_source.bed_history region.bed &&
18 #end if 18 #end if