Mercurial > repos > ecology > tool_odv_history

changeset 2:5040d466761b draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_data_view_manager commit 6ece1590d24793fc508b9237760827e79eb71c5d
author ecology
date Wed, 11 Jun 2025 18:23:30 +0000
parents fce3b7d55db8
children 9e462c4e8367
files tool_odv_history.xml
diffstat 1 files changed, 9 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/tool_odv_history.xml	Thu Jun 05 16:48:12 2025 +0000
+++ b/tool_odv_history.xml	Wed Jun 11 18:23:30 2025 +0000
@@ -1,7 +1,7 @@
 <tool id="tool_odv_history" name="ODV history manager" version="@VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05" license="MIT">
     <description>reports user action performed with ODV</description>
     <macros>
-        <token name="@VERSION@">1.0</token>
+        <token name="@VERSION@">1.1</token>
         <token name="@VERSION_SUFFIX@">0.1</token>
     </macros>
     <requirements>
@@ -16,7 +16,7 @@
         mkdir -p ./outputs &&
 
 	#for $i, $infile in enumerate($input_raw):
-        	cp '$infile' '/runtime/data-in-raw/${infile.element_identifier}.nc' &&
+        	cp '$infile' '/runtime/data-in-raw/${infile.element_identifier}' &&
         #end for
         #if $input_odv:
             #for $i, $infile in enumerate($input_odv):            
@@ -43,7 +43,7 @@
             #mandatory information
                 file_name_list_raw :
                     #for $i, $infile in enumerate($input_raw):
-                        #set name_raw='${infile.element_identifier}.nc'
+                        #set name_raw='${infile.element_identifier}'
                         - ${name_raw}
                     #end for
             #optional
@@ -111,8 +111,9 @@
     </outputs>
     <tests>
         <test expect_num_outputs="2">
-            <param name="input_raw" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/3ae832154f55c76a7c95a5dc1e6bb19946917233/galaxy_tool/test-data/QCV_harmonizer_NetCDF_data.netcdf"/>
-            <param name="input_hist" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/3ae832154f55c76a7c95a5dc1e6bb19946917233/galaxy_tool/test-data/history_from_odv_collection.txt"/>
+            <param name="input_raw" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/QCV_harmonizer_NetCDF_data_0.nc"/>
+            <param name="input_hist" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/history_from_odv_collection.txt"/>
+            <param name="input_odv" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/odv_collection.txt"/>
             <conditional name="config">
                 <param name="type" value="no"/>
             </conditional>
@@ -120,8 +121,9 @@
             <output_collection name="csv_files" type="list" count="1"/>
         </test>
         <test expect_num_outputs="2">
-            <param name="input_raw" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/3ae832154f55c76a7c95a5dc1e6bb19946917233/galaxy_tool/test-data/QCV_harmonizer_NetCDF_data.netcdf"/>
-            <param name="input_hist" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/3ae832154f55c76a7c95a5dc1e6bb19946917233/galaxy_tool/test-data/history_from_odv_collection.txt"/>
+            <param name="input_raw" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/QCV_harmonizer_NetCDF_data_0.nc"/>
+            <param name="input_hist" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/history_from_odv_collection.txt"/>
+            <param name="input_odv" location="https://gitlab.com/pokapok-projects/easy-qcv-bgc/qcv-bgc-tools/-/raw/fe047f301f0c384ad0668a73dfe776d9ac482d0f/galaxy_tool/test-data/odv_collection.txt"/>
             <conditional name="config">
                 <param name="type" value="yes"/>
                 <param name="qc_convention" value="ARGO"/>