Mercurial > repos > ecology > raster_template
annotate entities_templates.R @ 0:04b3a90fa431 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
author | ecology |
---|---|
date | Tue, 10 Sep 2024 12:49:23 +0000 |
parents | |
children |
rev | line source |
---|---|
0
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
1 #19/12/2023 #SEGUINEAU Pauline |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
2 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
3 #Load arguments |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
4 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
5 if (length(commandArgs(trailingOnly = TRUE)) > 0) { |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
6 data_objects <- commandArgs(trailingOnly = TRUE)[1] |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
7 } |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
8 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
9 #Transform arguments |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
10 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
11 data = strsplit(data_objects," ")[[1]] |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
12 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
13 #Make entities templates for raster and/or vector and/or other entities data |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
14 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
15 EMLassemblyline::template_entities(path="output_template",data.path="data_files",data.objects=data) |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
16 |
04b3a90fa431
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff
changeset
|
17 |