Mercurial > repos > ecology > obisindicators

annotate macro.xml @ 4:8ca01a4cfd27 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
author ecology
date Tue, 05 Nov 2024 14:17:36 +0000
parents 51b30155533d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
1 <macros>
1
51b30155533d planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit d1d3e8640457c30349b842ea05de64b9312890f4
ecology
parents: 0
diff changeset
2 <token name="@VERSION@">0.0.2</token>
4
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
3 <xrefs>
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
4 <xref type="bio.tools">obisindicators</xref>
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
5 </xrefs>
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
6 <xml name="requirements">
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
7 <requirements>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
8 <requirement type="package" version="4.2.2">r-base</requirement>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
9 <requirement type="package" version="3.4.0">r-ggplot2</requirement>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
10 <yield />
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
11 </requirements>
4
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
12
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
13 </xml>
4
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
14 <xml name="obis_input">
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
15 <param name="input" type="data" format="tabular,csv,txt" label="Input table"/>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
16 <param name="colnames" type="boolean" label="First line is a header line" checked="true"/>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
17 </xml>
4
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
18 <xml name="obis_bibref">
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
19 <citations>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
20 <citation type="bibtex">
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
21 @Manual{,
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
22 title = {obisindicators: Develop marine biodiversity indicators from OBIS data},
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
23 author = {Ben Ben and Pieter Provoost and Tylar Murray},
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
24 year = {2022},
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
25 note = {https://marinebon.org/obisindicators,
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
26 https://github.com/marinebon/obisindicators},
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
27 }
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
28 </citation>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
29 </citations>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
30 </xml>
4
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
31 <xml name="obis_doiref">
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
32 <citations>
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
33 <citation type="doi">DOI:10.5281/zenodo.6969395</citation>
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
34 </citations>
8ca01a4cfd27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 13ac67c0a21d742b29e6273cdff058560abad770
ecology
parents: 1
diff changeset
35 </xml>
0
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
36 <xml name="topic">
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
37 <edam_topics>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
38 <edam_topic>topic_0610</edam_topic>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
39 <edam_topic>topic_3050</edam_topic>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
40 </edam_topics>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
41 </xml>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
42 </macros>
7899febbfb94 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit 1e0b3b101d2380338030e607e6949331439c6dfc
ecology
parents:
diff changeset
43