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changeset 1:4bcab54d19eb draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow commit 3149b752715a4097aa6f125cbcf291b2da106599
author ecology
date Sun, 25 May 2025 08:23:13 +0000
parents d19c3cbbdd7e
children
files CRSconverter.R CRSconverter.xml test-data/shapefile/output.dbf test-data/shapefile/output.prj test-data/shapefile/output.shp test-data/shapefile/output.shx test-data/shapefile/shapefile.dbf test-data/shapefile/shapefile.prj test-data/shapefile/shapefile.shp test-data/shapefile/shapefile.shx
diffstat 10 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/CRSconverter.R	Tue May 20 09:52:08 2025 +0000
+++ b/CRSconverter.R	Sun May 25 08:23:13 2025 +0000
@@ -31,7 +31,7 @@
 
 
 save_as_shp_fun <- function(){
-    write_sf(Transformed_spacial_coordinates, "output.shp")
+    write_sf(Transformed_spacial_coordinates, "shapefile.shp")
 }
 
 
--- a/CRSconverter.xml	Tue May 20 09:52:08 2025 +0000
+++ b/CRSconverter.xml	Sun May 25 08:23:13 2025 +0000
@@ -2,7 +2,7 @@
     <description>from environmental predictors for species distribution modeling</description>
 
     <macros>
-        <token name="@TOOL_VERSION@">1.0</token> 
+        <token name="@TOOL_VERSION@">1.1</token> 
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
 
@@ -36,7 +36,7 @@
         #if $output_file_format == 'shp'
             &&
             mkdir -p '$shapefile.extra_files_path' &&
-            mv output.* ${shapefile.extra_files_path}
+            mv shapefile.* ${shapefile.extra_files_path}
         #else
             && mv output.* '$output'
         #end if
@@ -129,10 +129,10 @@
             <param name ="output_file_format" value="shp"/>
             
             <output file="shapefile/shapefile_shp.html" name="shapefile">
-                <extra_files type="file" name="output.shp" value="shapefile/output.shp"/>
-                <extra_files type="file" name="output.shx" value="shapefile/output.shx"/>
-                <extra_files type="file" name="output.dbf" value="shapefile/output.dbf" compare="sim_size" delta="50"/>
-                <extra_files type="file" name="output.prj" value="shapefile/output.prj"/>
+                <extra_files type="file" name="shapefile.shp" value="shapefile/shapefile.shp"/>
+                <extra_files type="file" name="shapefile.shx" value="shapefile/shapefile.shx"/>
+                <extra_files type="file" name="shapefile.dbf" value="shapefile/shapefile.dbf" compare="sim_size" delta="50"/>
+                <extra_files type="file" name="shapefile.prj" value="shapefile/shapefile.prj"/>
             </output>
         </test>
         <test expect_num_outputs="1">
Binary file test-data/shapefile/output.dbf has changed
--- a/test-data/shapefile/output.prj	Tue May 20 09:52:08 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-PROJCS["unknown",GEOGCS["GCS_unknown",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Lambert_Azimuthal_Equal_Area"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",0.0],PARAMETER["Central_Meridian",0.0],PARAMETER["Latitude_Of_Origin",-90.0],UNIT["Meter",1.0]]
\ No newline at end of file
Binary file test-data/shapefile/output.shp has changed
Binary file test-data/shapefile/output.shx has changed
Binary file test-data/shapefile/shapefile.dbf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/shapefile/shapefile.prj	Sun May 25 08:23:13 2025 +0000
@@ -0,0 +1,1 @@
+PROJCS["unknown",GEOGCS["GCS_unknown",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Lambert_Azimuthal_Equal_Area"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",0.0],PARAMETER["Central_Meridian",0.0],PARAMETER["Latitude_Of_Origin",-90.0],UNIT["Meter",1.0]]
\ No newline at end of file
Binary file test-data/shapefile/shapefile.shp has changed
Binary file test-data/shapefile/shapefile.shx has changed