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annotate loop_col_scale.r @ 0:42b51a52e308 draft

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planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
author ecology
date Wed, 04 Jan 2023 13:21:14 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
1 library("rmarkdown")
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
2
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
3 df <- indic
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
4 df_full <- indic_full
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
5 dir.create("results")
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
6 slices <- unique(df$Site)[!is.na(unique(df$Site))]
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
7
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
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8 for (v in slices) {
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
9 rmarkdown::render(report,
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
10 output_file = paste0(v, ".docx"),
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
11 output_dir = file.path("results"),
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
12 params = list(Site = v)
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
diff changeset
13 )
42b51a52e308 planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
ecology
parents:
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14 }