Mercurial > repos > drosofff > suite_metavisitor_1_2

changeset 1:9c216366b042 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/suites/suite_metavisitor_1_2 commit d7c8394f3b9e5a828ac0fb061f187b634e0bf5ef
author drosofff
date Mon, 27 Mar 2017 06:57:08 -0400
parents 860de03730ad
children
files repository_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Jan 20 17:25:01 2016 -0500
+++ b/repository_dependencies.xml	Mon Mar 27 06:57:08 2017 -0400
@@ -1,21 +1,28 @@
 <?xml version="1.0"?>
 <repositories>
-    <repository changeset_revision="91cce7c1436d" name="yac_clipper" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="1e06fa2771f9" name="concatenate_multiple_datasets" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="c1bfa227bbb6" name="msp_sr_bowtie" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="951cb6b3979b" name="msp_fasta_tabular_converter" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="befdb392fece" name="fetch_fasta_from_ncbi" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="62e4d56ebb6f" name="sra_tools" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="a18edcf9c7ed" name="yac_clipper" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="201c568972c3" name="concatenate_multiple_datasets" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="615d2550977f" name="msp_sr_bowtie" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="36388b666bfc" name="msp_fasta_tabular_converter" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="a9d8f69d59fb" name="fetch_fasta_from_ncbi" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     <repository changeset_revision="ddb463fdf57e" name="msp_cap3" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="c7a0ec8263b4" name="cherry_pick_fasta" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="8f5d48294f70" name="msp_blastparser_and_hits" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="705a2e2df7fb" name="get_orfs_or_cdss" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="f08d9c814ffb" name="msp_oases" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="7fb07a6ab968" name="blast_to_scaffold" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="a2e034f1638e" name="blastx_to_scaffold" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="019c2a81547a" name="bowtie2" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="f7684171dab3" name="cherry_pick_fasta" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="1991c830504a" name="msp_blastparser_and_hits" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="dc684e37f668" name="msp_oases" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="0a576a57a9eb" name="trinityrnaseq" owner="anmoljh" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="81ffa74cf96e" name="blast_to_scaffold" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="940c0c669e96" name="blastx_to_scaffold" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="a9d4f71dbfb0" name="bowtie2" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="377ac2829eac" name="fastx_trimmer" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     <repository changeset_revision="186b8d913e6c" name="fastq_to_fasta" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     <repository changeset_revision="c8cd0a03db49" name="fasta_filter_by_length" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="e4874d1ae69d" name="msp_sr_readmap_and_size_histograms" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="92898cc3ea19" name="msp_sr_readmap_and_size_histograms" owner="drosofff" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     <repository changeset_revision="9ea374bb0350" name="regex_find_replace" owner="jjohnson" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="6d8793a4923d" name="khmer_normalize_by_median" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="ee081dc6c578" name="khmer_normalize_by_median" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="e87aeff2cf88" name="data_manager_bowtie2_index_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="086edfff112b" name="data_manager_bowtie_index_builder" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="86fa71e9b427" name="data_manager_fetch_genome_dbkeys_all_fasta" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="3034ce97dd33" name="ncbi_blast_plus" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="35cb17bd8bf9" name="spades" owner="nml" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>