Mercurial > repos > drosofff > msp_sr_bowtie

changeset 28:c1ae0c9ad7d1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 65a33cc7068479ceeb6cdb371de557af475b9c86-dirty
author drosofff
date Sun, 02 Jul 2017 12:22:16 -0400
parents 2578aea69626
children 04685a1b3de1
files sRbowtie.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/sRbowtie.xml	Sun Jul 02 07:15:35 2017 -0400
+++ b/sRbowtie.xml	Sun Jul 02 12:22:16 2017 -0400
@@ -6,9 +6,9 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if str($refGenomeSource.genomeSource) == "history":
-            bowtie-build -f '$refGenomeSource.ownFile' local_index &&
+            bowtie-build -f $refGenomeSource.ownFile local_index &&
         #else:
-            ln -f -s '$refGenomeSource.index.fields.path' local_index &&
+            ln -f -s $refGenomeSource.index.fields.path local_index &&
         #end if
         #if $input.extension == "fasta":
             #set format = "-f"