# HG changeset patch
# User drosofff
# Date 1499012536 14400
# Node ID c1ae0c9ad7d125e109ccb93eaffa84c85195364a
# Parent  2578aea69626c4b6dcf48a909ef5a4c4b9d57100
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 65a33cc7068479ceeb6cdb371de557af475b9c86-dirty

diff -r 2578aea69626 -r c1ae0c9ad7d1 sRbowtie.xml
--- a/sRbowtie.xml	Sun Jul 02 07:15:35 2017 -0400
+++ b/sRbowtie.xml	Sun Jul 02 12:22:16 2017 -0400
@@ -6,9 +6,9 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if str($refGenomeSource.genomeSource) == "history":
-            bowtie-build -f '$refGenomeSource.ownFile' local_index &&
+            bowtie-build -f $refGenomeSource.ownFile local_index &&
         #else:
-            ln -f -s '$refGenomeSource.index.fields.path' local_index &&
+            ln -f -s $refGenomeSource.index.fields.path local_index &&
         #end if
         #if $input.extension == "fasta":
             #set format = "-f"