Mercurial > repos > drosofff > msp_sr_bowtie

comparison sRbowtie.xml @ 23:411b6453b5d0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 7249152d2d55b0818bb870330a7c2be00cacf449
author drosofff
date Tue, 27 Jun 2017 04:49:57 -0400
parents 764181d43c36
children 2f4e22f2177d
comparison
equal deleted inserted replaced
22:764181d43c36 23:411b6453b5d0
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2">bowtie</requirement> 4 <requirement type="package" version="1.1.2">bowtie</requirement>
5 <requirement type="package" version="1.2">samtools</requirement> 5 <requirement type="package" version="1.2">samtools</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #if $refGenomeSource.genomeSource == "history": 8 #if str($refGenomeSource.genomeSource) == "history":
9 bowtie-build -f '$refGenomeSource.ownFile' local_index && 9 bowtie-build -f '$refGenomeSource.ownFile' local_index &&
10 #else: 10 #else:
11 ln -f -s '$refGenomeSource.index.fields.path' local_index && 11 ln -f -s '$refGenomeSource.index.fields.path' local_index &&
12 #end if 12 #end if
13 #if $input.extension == "fasta": 13 #if $input.extension == "fasta":