Mercurial > repos > dfornika > tetyper

changeset 1:f38ce8ec1d87 draft

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Uploaded
author dfornika
date Sat, 23 Nov 2019 04:02:59 +0000
parents 481b5fc3a79a
children 9a8952794df5
files tetyper.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tetyper.xml	Sat Nov 23 02:35:12 2019 +0000
+++ b/tetyper.xml	Sat Nov 23 04:02:59 2019 +0000
@@ -12,6 +12,8 @@
             #elif $collection_paired.selector == "collection":
                 --fq1 '${single_paired.input_pair.forward}' --fq2 '${single_paired.input_pair.reverse}'
             #end if
+            --ref '${reference}'
+            --flank_length '${flank_length}'
             --outprefix output
         ]]>
     </command>
@@ -29,11 +31,12 @@
                 <param format="fastq" name="reverse_input" type="data" label="Reverse strand" help="FASTQ dataset"/>
             </when>
         </conditional>
-        <param name="reference" />
-        <param name="flank_length" />
+        <param name="reference" type="data" format="fasta"/>
+        <param name="flank_length" type="integer" min="4" default="5" max="16"/>
     </inputs>
     <outputs>
         <data name="summary" format="tabular" from_work_dir="output_summary.txt" label="${tool.name} on ${on_string} summary"/>
+        <data name="log" format="text" from_work_dir="output.log" label="${tool.name} on ${on_string} summary"/>
     </outputs>
     <tests>
     </tests>