Mercurial > repos > dfornika > snippy_clean_full_aln

changeset 1:20d204462f64 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/snippy_clean commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
author dfornika
date Fri, 24 Jan 2020 22:20:11 +0000
parents 61750fb74b71
children 37e4abc73f46
files snippy_clean_full_aln.xml
diffstat 1 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/snippy_clean_full_aln.xml	Fri Jan 24 21:35:56 2020 +0000
+++ b/snippy_clean_full_aln.xml	Fri Jan 24 22:20:11 2020 +0000
@@ -9,16 +9,18 @@
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
         snippy-clean_full_aln
-            ${'full_aln'}
-            > ${'clean_full_aln'}
+            '${full_aln}'
+            --to '${replacement_char}'
+            > '${clean_full_aln}'
     ]]></command>
 
     <inputs>
-        <param name="full_aln" type="data" multiple="true" format="fasta" label="Snippy core.full.aln file" help="" />
+        <param name="full_aln" type="data" format="fasta" label="Snippy core.full.aln file" help="" />
+        <param name="replacement_char" type="data" format="text" default="N" label="Replacement character" help="" />
     </inputs>
 
     <outputs>
-        <data format="fasta" name="clean_full_aln" label="${tool.name} on ${on_string} cleaned core alignment fasta" />
+        <data name="clean_full_aln" format="fasta" label="${tool.name} on ${on_string} cleaned core alignment" />
     </outputs>
 
     <tests>