Mercurial > repos > dfornika > screen_abricate_results

diff screen_abricate_results.xml @ 0:a54032ac6a55 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
author dfornika
date Thu, 26 Sep 2019 14:56:27 -0400
parents
children b776ba9e502f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/screen_abricate_results.xml	Thu Sep 26 14:56:27 2019 -0400
@@ -0,0 +1,28 @@
+<tool id="screen_abricate_results" name="Screen Abricate Report" version="0.1.0">
+    <description>Screens an abricate report for genes of interest</description>
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        '${__tool_directory__}/screen_abricate_results.py'
+             '${abricate_report}'
+             --screen '${screen}'
+             > '${output}'
+    ]]></command>
+    <inputs>
+        <param name="abricate_report" type="data" format="tabular" />
+        <param name="screen" type="data" format="json" />
+    </inputs>
+    <outputs>
+        <data name="output" type="data" label="Output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="abricate_report" value="abricate_report.tsv"/>
+            <param name="screen" value="screen.json"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+    ]]></help>
+    <citations>
+    </citations>
+</tool>