Mercurial > repos > dfornika > screen_abricate_results
comparison screen_abricate_results.xml @ 0:a54032ac6a55 draft
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
| author | dfornika |
|---|---|
| date | Thu, 26 Sep 2019 14:56:27 -0400 |
| parents | |
| children | b776ba9e502f |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:a54032ac6a55 |
|---|---|
| 1 <tool id="screen_abricate_results" name="Screen Abricate Report" version="0.1.0"> | |
| 2 <description>Screens an abricate report for genes of interest</description> | |
| 3 <requirements> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 '${__tool_directory__}/screen_abricate_results.py' | |
| 7 '${abricate_report}' | |
| 8 --screen '${screen}' | |
| 9 > '${output}' | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param name="abricate_report" type="data" format="tabular" /> | |
| 13 <param name="screen" type="data" format="json" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" type="data" label="Output" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="abricate_report" value="abricate_report.tsv"/> | |
| 21 <param name="screen" value="screen.json"/> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 ]]></help> | |
| 26 <citations> | |
| 27 </citations> | |
| 28 </tool> |