Mercurial > repos > dfornika > screen_abricate_results

annotate abricate_report_screening_files.loc.sample @ 1:51fa887f7cfb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
author dfornika
date Thu, 26 Sep 2019 17:57:20 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
1 # Expect three columns, tab separated, as follows:
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
4 # - path (Path to the abricate report screening file (tsv format))
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
5 #
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
6 # e.g.
51fa887f7cfb planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/screen_abricate_results commit 607fa944c574740d29ea3ce948707b8bd17c7d58-dirty
dfornika
parents:
diff changeset
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv