Mercurial > repos > dfornika > pathogist

changeset 3:17d0bde56b41 draft

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planemo upload for repository https://github.com/dfornika/tools-pathogist/tree/master/tools
author dfornika
date Thu, 05 Oct 2017 15:14:03 -0400
parents 38f03f2c2967
children 7675e3475676
files data_managers/data_manager_mentalist_build_database/data_manager/mentalist_build.xml
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_managers/data_manager_mentalist_build_database/data_manager/mentalist_build.xml	Thu Oct 05 13:44:29 2017 -0400
+++ b/data_managers/data_manager_mentalist_build_database/data_manager/mentalist_build.xml	Thu Oct 05 15:14:03 2017 -0400
@@ -5,8 +5,8 @@
   </requirements>
   <command detect_errors="exit_code">
   <![CDATA[
-	   mkdir mentalist-database && cd mentalist-database &&
-	   MentaLiST.jl
+	   mkdir mentalist-databases && cd mentalist-databases &&
+	   mentalist
 	   build_db
 	   --db '$kmer_database'
 	   -k '$kmer_size'
@@ -19,6 +19,8 @@
   ]]>
   </command>
   <inputs>
+    <param name="kmer_database" type="text"
+	   label="Database Name" help="Database Name" />
     <param name="kmer_size" type="integer"
 	   label="Kmer size" help="Kmer size"
 	   value="31" min="1" max="32" />