Mercurial > repos > dfornika > mob_suite

changeset 20:80feea4c7a68 draft

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planemo upload for repository https://github.com/phac-nml/mob-suite commit f50ed223904d1471d35d6057a651caf0496d444d-dirty
author dfornika
date Mon, 08 Jul 2019 14:57:50 -0400
parents 115b462224cf
children 7a86e6e73d62
files mob_recon.xml
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/mob_recon.xml	Fri Jun 28 22:17:09 2019 -0400
+++ b/mob_recon.xml	Mon Jul 08 14:57:50 2019 -0400
@@ -14,11 +14,10 @@
     mob_recon  
       --num_threads \${GALAXY_SLOTS:-4}  
       --infile "${named_input}" 
-      --plasmid_db '${mob_suite_database.fields.path}/references_updated.fasta'
-      --plasmid_mash_db '${mob_suite_database.fields.path}/references_updated.fasta.msh'
+      --database_directory '${mob_suite_database.fields.path}
     #if str($adv_param.unicycler_contigs) == "True":
       --unicycler_contigs 
-    #end if   
+    #end if
     #if str($adv_param.run_circlator) == "True":
       --run_circlator 
     #end if