Mercurial > repos > dfornika > mob_suite
changeset 30:14d499c3fe1d draft
planemo upload for repository https://github.com/phac-nml/mob-suite commit 0dd60ac52b9d34ee1f446182eda78cb8c01de6d1-dirty
| author | dfornika |
|---|---|
| date | Tue, 24 Sep 2019 12:53:25 -0400 |
| parents | 3851907651ad |
| children | 1a22c8de4205 |
| files | mob_recon.xml |
| diffstat | 1 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/mob_recon.xml Mon Sep 23 21:33:51 2019 -0400 +++ b/mob_recon.xml Tue Sep 24 12:53:25 2019 -0400 @@ -33,7 +33,8 @@ --min_con_ident '${adv_param.min_con_ident}' --min_rpp_ident '${adv_param.min_rpp_ident}' --outdir '.' && - mkdir ./plasmids && (cp plasmid*.fasta ./plasmids 2> /dev/null || true) + mkdir ./plasmids && (cp plasmid*.fasta ./plasmids 2> /dev/null || true) && + zip -r plasmids.zip plasmids ]]> </command> <inputs> @@ -76,9 +77,11 @@ <data name="repetitive_element_report" format="tabular" from_work_dir="repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/> <data name="mobtyper_aggregate_report" format="tabular" from_work_dir="mobtyper_aggregate_report.txt" label="${tool.name} on ${on_string}: Aggregate MOB-typer report for all contigs"/> <data name="chromosome" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: Chromosome" /> - <collection name="plasmids" type="list" label="${tool.name} on ${on_string}: Plasmids"> + <data name="plasmids_zipped" format="fasta" from_work_dir="plasmids.zip" label="${tool.name} on ${on_string}: Plasmids (zipped)" /> + <collection name="plasmids_collection" type="list" label="${tool.name} on ${on_string}: Plasmids (Collection)"> <discover_datasets pattern="__name_and_ext__" directory="plasmids" /> </collection> + </outputs> <tests> <test>