Mercurial > repos > dfornika > mob_suite

changeset 6:066c1e903c30 draft

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planemo upload for repository https://github.com/phac-nml/mob-suite commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty
author dfornika
date Mon, 24 Jun 2019 15:22:47 -0400
parents 7f820aed7dd1
children cc05569322a9
files mob_recon.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/mob_recon.xml	Fri Jun 21 21:07:36 2019 -0400
+++ b/mob_recon.xml	Mon Jun 24 15:22:47 2019 -0400
@@ -14,7 +14,8 @@
     mob_recon  
       --num_threads \${GALAXY_SLOTS:-4}  
       --infile "${named_input}" 
-      -d '${mob_suite_database_dir.fields.path}'
+      --plasmid_db '${mob_suite_database_dir.fields.path}/references_updated.fasta'
+      --plasmid_mash_db '${mob_suite_database_dir.fields.path}/references_updated.fasta.msh'
     #if str($adv_param.unicycler_contigs) == "True":
       --unicycler_contigs 
     #end if