Mercurial > repos > dfornika > mob_recon
changeset 2:98a686bf8d1c draft
"planemo upload for repository https://github.com/phac-nml/mob-suite commit dcdac86bce5c44043516fbd472ab7c19d7bf4d50-dirty"
| author | dfornika |
|---|---|
| date | Tue, 05 Nov 2019 17:09:40 -0500 |
| parents | b926a710e788 |
| children | 84cf5ed52f58 |
| files | mob_recon.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/mob_recon.xml Tue Nov 05 16:50:55 2019 -0500 +++ b/mob_recon.xml Tue Nov 05 17:09:40 2019 -0500 @@ -33,8 +33,7 @@ --min_rpp_ident '${adv_param.min_rpp_ident}' --outdir '.' && mkdir ./plasmids && - (cp plasmid*.fasta ./plasmids 2> /dev/null || true) && - tar -czf plasmids.tgz plasmids + (cp plasmid*.fasta ./plasmids 2> /dev/null || true) ]]> </command> <inputs> @@ -71,8 +70,8 @@ <outputs> <data name="contig_report" format="tabular" from_work_dir="contig_report.txt" label="${tool.name} on ${on_string}: Overall contig MOB-recon report"/> <data name="repetitive_blast_report" format="tabular" from_work_dir="repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/> - <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: plasmids (zipped)"/> - <data name="plasmids_zipped" type="data" format="zip" from_work_dir="plasmids.tgz" label="${tool.name} on ${on_string}: plasmids (zipped)"/> + <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: chromosome"/> + <data name="plasmids" type="data" format="fasta" from_work_dir="plasmids" label="${tool.name} on ${on_string}: plasmids"/> </outputs> <tests> <test>