# HG changeset patch
# User dfornika
# Date 1572991780 18000
# Node ID 98a686bf8d1c9a7bb853b503cddce7eb342d90b1
# Parent  b926a710e788f0c2218edd2bb34cda9a5a74cdd7
"planemo upload for repository https://github.com/phac-nml/mob-suite commit dcdac86bce5c44043516fbd472ab7c19d7bf4d50-dirty"

diff -r b926a710e788 -r 98a686bf8d1c mob_recon.xml
--- a/mob_recon.xml	Tue Nov 05 16:50:55 2019 -0500
+++ b/mob_recon.xml	Tue Nov 05 17:09:40 2019 -0500
@@ -33,8 +33,7 @@
     --min_rpp_ident   '${adv_param.min_rpp_ident}'
     --outdir '.' && 
     mkdir ./plasmids &&
-    (cp plasmid*.fasta ./plasmids 2> /dev/null || true) &&
-    tar -czf plasmids.tgz plasmids
+    (cp plasmid*.fasta ./plasmids 2> /dev/null || true)
   ]]>  
   </command>
   <inputs>
@@ -71,8 +70,8 @@
   <outputs>
     <data name="contig_report" format="tabular" from_work_dir="contig_report.txt" label="${tool.name} on ${on_string}: Overall contig MOB-recon report"/> 
     <data name="repetitive_blast_report" format="tabular" from_work_dir="repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/>
-    <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: plasmids (zipped)"/>
-    <data name="plasmids_zipped" type="data" format="zip" from_work_dir="plasmids.tgz" label="${tool.name} on ${on_string}: plasmids (zipped)"/>
+    <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: chromosome"/>
+    <data name="plasmids" type="data" format="fasta" from_work_dir="plasmids" label="${tool.name} on ${on_string}: plasmids"/>
   </outputs>
   <tests>
     <test>