comparison amino2consensus.py @ 21:d099ef46fd42 draft

planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
author dfornika
date Wed, 25 Sep 2019 18:51:15 -0400
parents b1e1f49ebe14
children b5df889acab3
comparison
equal deleted inserted replaced
20:b1e1f49ebe14 21:d099ef46fd42
8 AMINO_ACIDS = ['A','C','D','E','F','G','H','I','K','L','M','N','P','Q','R','S','T','V','W','Y','*'] 8 AMINO_ACIDS = ['A','C','D','E','F','G','H','I','K','L','M','N','P','Q','R','S','T','V','W','Y','*']
9 9
10 def determine_amino(amino_counts, threshold): 10 def determine_amino(amino_counts, threshold):
11 amino = "" 11 amino = ""
12 total_count = sum(amino_counts.values()) 12 total_count = sum(amino_counts.values())
13 amino_with_max_counts = sorted(amino_counts, key=amino_counts.get, reverse=True)[0] 13 amino_with_max_counts, count = sorted(amino_counts.items(), key=lambda item: item[1], reverse=True)[0]
14 if total_count == 0: 14 if total_count == 0:
15 amino = "#" 15 amino = "#"
16 elif (amino_counts[amino_with_max_counts] / float(total_count)) > threshold: 16 elif (amino_counts[amino_with_max_counts] / float(total_count)) > threshold:
17 amino = amino_with_max_counts 17 amino = amino_with_max_counts
18 else: 18 else: