Mercurial > repos > dfornika > micall_lite

annotate amino2consensus.xml @ 17:6043d06d78cb draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
author dfornika
date Wed, 25 Sep 2019 18:26:51 -0400
parents b02eea0d8b56
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61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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1 <tool id="amino2consensus" name="MiCall Amino to Consensus" version="@TOOL_VERSION@+galaxy0">
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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5 </macros>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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6 <requirements>
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7 </requirements>
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8 <version_command>echo "@TOOL_VERSION@"</version_command>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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9 <command detect_errors="exit_code">
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10 <![CDATA[
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11 '${__tool_directory__}/amino2consensus.py'
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61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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12 --threshold ${threshold}
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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13 '${amino}'
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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14 > '${consensus}'
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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15 ]]>
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16 </command>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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17 <inputs>
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18 <param format="csv" name="amino" type="data" label="MiCall amino.csv output" help="MiCall amino.csv output" />
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19 <param name="threshold" type="float" min="0" value="0.15" max="1" label="Threshold" help="Threshold" />
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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20 </inputs>
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21 <outputs>
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22 <data name="consensus" label="consensus" format="fasta"/>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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23 </outputs>
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24 <tests>
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25 <test>
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26 </test>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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27 </tests>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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28 <help><![CDATA[
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29 ]]></help>
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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30 <expand macro="citations" />
61667ff2c8b5 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
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31 </tool>