Mercurial > repos > dfornika > mentalist
changeset 25:b9dfa8aa503d draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 858e2ab4997b71b8a3422f2f5df7102d01971171-dirty
| author | dfornika |
|---|---|
| date | Thu, 12 Oct 2017 19:13:11 -0400 |
| parents | e038a8823a99 |
| children | 01d50d174dbb |
| files | data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Thu Oct 12 15:19:43 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Thu Oct 12 19:13:11 2017 -0400 @@ -20,7 +20,7 @@ base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_cgmlst" scheme_files_path = base_path + "_scheme" database_path = base_path + "_k" + str(kmer_size) - database_name = base_path + "_k" + str(kmer_size) + ".h5" + database_name = base_path + "_k" + str(kmer_size) + ".jld" display_name = scheme + " k=" + str(kmer_size) + " (PubMLST)" args = [ 'mentalist', 'download_cgmlst', '-s', scheme, '-k', str(kmer_size), '--db', database_name, '-o', scheme_files_path] proc = subprocess.Popen( args=args, shell=False, cwd=target_directory )
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Thu Oct 12 15:19:43 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Thu Oct 12 19:13:11 2017 -0400 @@ -20,7 +20,7 @@ base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_pubmlst" scheme_files_path = base_path + "_scheme" database_path = base_path + "_k" + str(kmer_size) - database_name = base_path + "_k" + str(kmer_size) + ".h5" + database_name = base_path + "_k" + str(kmer_size) + ".jld" display_name = scheme + " k=" + str(kmer_size) + " (PubMLST)" args = [ 'mentalist', 'download_pubmlst', '-s', scheme, '-k', str(kmer_size), '--db', database_name, '-o', scheme_files_path] proc = subprocess.Popen( args=args, shell=False, cwd=target_directory )