Mercurial > repos > dfornika > mentalist
changeset 22:31615c65dc8a draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7e8b159e34b91cb5e76ba86feaea24158565606b-dirty
| author | dfornika |
|---|---|
| date | Wed, 11 Oct 2017 20:28:32 -0400 |
| parents | aaafd968651a |
| children | d151478ebf97 |
| files | data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 20:20:28 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 20:28:32 2017 -0400 @@ -16,7 +16,8 @@ def mentalist_download_pubmlst( data_manager_dict, kmer_size, scheme, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ): - base_path = scheme.lower().replace(" ", "_").translate(("_" * 256), string.punctuation) + "_pubmlst" + translation_table = string.maketrans(string.punctuation, ("_" * 32)) + base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_pubmlst" scheme_files_path = base_path + "_scheme" database_path = base_path + "_k" + str(kmer_size) database_name = base_path + "_k" + str(kmer_size) + ".h5"