# HG changeset patch # User dfornika # Date 1507768112 14400 # Node ID 31615c65dc8a3ff4433b1454530cf6abebc1b1b7 # Parent aaafd968651a2dfab8778d5b70490939efb569d7 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7e8b159e34b91cb5e76ba86feaea24158565606b-dirty diff -r aaafd968651a -r 31615c65dc8a data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py --- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 20:20:28 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 20:28:32 2017 -0400 @@ -16,7 +16,8 @@ def mentalist_download_pubmlst( data_manager_dict, kmer_size, scheme, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ): - base_path = scheme.lower().replace(" ", "_").translate(("_" * 256), string.punctuation) + "_pubmlst" + translation_table = string.maketrans(string.punctuation, ("_" * 32)) + base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_pubmlst" scheme_files_path = base_path + "_scheme" database_path = base_path + "_k" + str(kmer_size) database_name = base_path + "_k" + str(kmer_size) + ".h5"