Mercurial > repos > dfornika > mentalist
changeset 9:2f2860ab7d3c draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7e8b159e34b91cb5e76ba86feaea24158565606b
| author | dfornika |
|---|---|
| date | Wed, 11 Oct 2017 14:27:37 -0400 |
| parents | b21885ec2a53 |
| children | 4ab1c1edb543 |
| files | data_managers/data_manager_conf.xml data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py |
| diffstat | 4 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/data_managers/data_manager_conf.xml Wed Oct 11 13:09:45 2017 -0400 +++ b/data_managers/data_manager_conf.xml Wed Oct 11 14:27:37 2017 -0400 @@ -9,7 +9,7 @@ <move type="directory" relativize_symlinks="True"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -24,7 +24,7 @@ <move type="directory" relativize_symlinks="True"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -39,7 +39,7 @@ <move type="directory" relativize_symlinks="True"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>
--- a/data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py Wed Oct 11 13:09:45 2017 -0400 +++ b/data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py Wed Oct 11 14:27:37 2017 -0400 @@ -22,7 +22,7 @@ if return_code: print("Error building database.", file=sys.stderr) sys.exit( return_code ) - data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) ) + data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name ) for data_table_name in data_table_names: _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )
--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Wed Oct 11 13:09:45 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Wed Oct 11 14:27:37 2017 -0400 @@ -18,7 +18,7 @@ if return_code: print("Error building database.", file=sys.stderr) sys.exit( return_code ) - data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) ) + data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name ) for data_table_name in data_table_names: _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 13:09:45 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Wed Oct 11 14:27:37 2017 -0400 @@ -18,7 +18,7 @@ if return_code: print("Error building database.", file=sys.stderr) sys.exit( return_code ) - data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) ) + data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name ) for data_table_name in data_table_names: _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )