# HG changeset patch
# User dfornika
# Date 1507746457 14400
# Node ID 2f2860ab7d3cb37b1f449c3a7bcc7e38569cdf91
# Parent  b21885ec2a533015f2d43f2d04461095e592379a
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7e8b159e34b91cb5e76ba86feaea24158565606b

diff -r b21885ec2a53 -r 2f2860ab7d3c data_managers/data_manager_conf.xml
--- a/data_managers/data_manager_conf.xml	Wed Oct 11 13:09:45 2017 -0400
+++ b/data_managers/data_manager_conf.xml	Wed Oct 11 14:27:37 2017 -0400
@@ -9,7 +9,7 @@
           <move type="directory" relativize_symlinks="True">
             <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
           </move>
-          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation>
           <value_translation type="function">abspath</value_translation>
         </column>
       </output>
@@ -24,7 +24,7 @@
           <move type="directory" relativize_symlinks="True">
             <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
           </move>
-          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation>
           <value_translation type="function">abspath</value_translation>
         </column>
       </output>
@@ -39,7 +39,7 @@
           <move type="directory" relativize_symlinks="True">
             <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
           </move>
-          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}</value_translation>
           <value_translation type="function">abspath</value_translation>
         </column>
       </output>
diff -r b21885ec2a53 -r 2f2860ab7d3c data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py
--- a/data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py	Wed Oct 11 13:09:45 2017 -0400
+++ b/data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.py	Wed Oct 11 14:27:37 2017 -0400
@@ -22,7 +22,7 @@
     if return_code:
         print("Error building database.", file=sys.stderr)
         sys.exit( return_code )
-    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) )
+    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name )
     for data_table_name in data_table_names:
         _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )
 
diff -r b21885ec2a53 -r 2f2860ab7d3c data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py
--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py	Wed Oct 11 13:09:45 2017 -0400
+++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py	Wed Oct 11 14:27:37 2017 -0400
@@ -18,7 +18,7 @@
     if return_code:
         print("Error building database.", file=sys.stderr)
         sys.exit( return_code )
-    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) )
+    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name )
     for data_table_name in data_table_names:
         _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )
 
diff -r b21885ec2a53 -r 2f2860ab7d3c data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py	Wed Oct 11 13:09:45 2017 -0400
+++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py	Wed Oct 11 14:27:37 2017 -0400
@@ -18,7 +18,7 @@
     if return_code:
         print("Error building database.", file=sys.stderr)
         sys.exit( return_code )
-    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=(database_name + '/' + database_name) )
+    data_table_entry = dict( value=database_name, dbkey=database_name, name=database_name, path=database_name )
     for data_table_name in data_table_names:
         _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )