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view data_managers/data_manager_conf.xml @ 5:7ff3267c1d11 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit b4e2e1e69829a9aaa33b29834ac2b557ff86cb74
author dfornika
date Tue, 10 Oct 2017 19:00:07 -0400
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children a0c05da8a961
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<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager_mentalist_download_pubmlstdata_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
</data_managers>