Mercurial > repos > dfornika > mentalist
diff data_managers/data_manager_conf.xml @ 5:7ff3267c1d11 draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit b4e2e1e69829a9aaa33b29834ac2b557ff86cb74
| author | dfornika |
|---|---|
| date | Tue, 10 Oct 2017 19:00:07 -0400 |
| parents | |
| children | a0c05da8a961 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_managers/data_manager_conf.xml Tue Oct 10 19:00:07 2017 -0400 @@ -0,0 +1,48 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.2"> + <data_table name="mentalist_databases"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="directory" relativize_symlinks="True"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> + <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.2"> + <data_table name="mentalist_databases"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="directory" relativize_symlinks="True"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> + <data_manager tool_file="data_manager_mentalist_download_pubmlstdata_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.2"> + <data_table name="mentalist_databases"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="directory" relativize_symlinks="True"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>