Mercurial > repos > dfornika > mentalist

annotate tools/mentalist_tree/mentalist_tree.xml @ 61:35f9c28b6fbb draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f59b512dfb769d6dd7e5e992a78bbe60d992ef78-dirty
author dfornika
date Tue, 12 Jun 2018 19:10:39 -0400
parents d36f7f883a30
children 931bd8ac187d
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61
35f9c28b6fbb planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f59b512dfb769d6dd7e5e992a78bbe60d992ef78-dirty
dfornika
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1 <tool id="mentalist_tree" name="MentaLiST Tree" version="0.1.8">
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97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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2 <requirements>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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3 <requirement type="package" version="3.4.1">r-base</requirement>
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d36f7f883a30 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f59b512dfb769d6dd7e5e992a78bbe60d992ef78
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4 <requirement type="package" version="2.3.1">r-phangorn</requirement>
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97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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5 </requirements>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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6 <command detect_errors="exit_code"><![CDATA[
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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7 $__tool_directory__/mentalist_tree
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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8 '${input}'
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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9 > '${output}'
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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10 ]]></command>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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11 <inputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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12 <param name="input" type="data" format="tabular" label="MentaLiST Distance Matrix" help=""/>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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13 </inputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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14 <outputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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15 <data name="output" format="newick"/>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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16 </outputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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17 <tests>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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18 <test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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19 <param name="input" value="mentalist_tree/small_input_00.tsv" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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20 <output name="output" file="mentalist_tree/small_output_00.nwk" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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21 </test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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22 <test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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23 <param name="input" value="mentalist_tree/med_input_00.tsv" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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24 <output name="output" file="mentalits_tree/med_output_00.nwk" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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25 </test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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26 <test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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27 <param name="input" value="mentalist_tree/large_input_00.tsv" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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28 <output name="output" file="mentalist_tree/large_output_00.nwk" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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29 </test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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30 </tests>
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31 <help><![CDATA[
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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32 mentalist_distance <input.tsv>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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33 ]]></help>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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34 <citations>
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35 </citations>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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36 </tool>