Mercurial > repos > dfornika > ivar_variants_to_vcf
view test-data/SAMEA6808195-variants.tsv @ 0:c87f6ad32fd8 draft default tip
"planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/ivar_variants_to_vcf commit 16332019b4aab6af58c74e631f390dfeef23a3dc"
| author | dfornika |
|---|---|
| date | Fri, 05 Jun 2020 05:10:05 +0000 |
| parents | |
| children |
line wrap: on
line source
REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA MN908947.3 30 A T 23 10 38 30 0 33 0.566038 53 1.95736e-12 TRUE NA NA NA NA NA MN908947.3 228 C T 3 0 47 3929 107 73 0.999237 3932 0 TRUE NA NA NA NA NA MN908947.3 241 C T 0 0 0 3943 127 72 1 3943 0 TRUE NA NA NA NA NA MN908947.3 3037 C T 0 0 0 1713 100 74 1 1713 0 TRUE NA NA NA NA NA MN908947.3 6696 C +T 4306 119 75 266 0 20 0.0313901 8474 1.36673e-56 TRUE NA NA NA NA NA MN908947.3 6872 G A 4567 4278 35 386 17 74 0.0779011 4955 1.45993e-131 TRUE NA NA NA NA NA MN908947.3 14408 C T 2 0 53 6478 209 75 0.999691 6480 0 TRUE NA NA NA NA NA MN908947.3 15168 G A 1792 1774 25 96 96 20 0.0508475 1888 1.18961e-14 TRUE NA NA NA NA NA MN908947.3 17126 T C 3 0 39 11851 4693 38 0.999747 11854 0 TRUE NA NA NA NA NA MN908947.3 19298 A T 22 5 37 1 1 34 0.0434783 23 0.5 FALSE NA NA NA NA NA MN908947.3 19305 T C 18 2 38 1 0 20 0.0526316 19 0.513514 FALSE NA NA NA NA NA MN908947.3 19345 T C 19 3 38 1 0 37 0.05 20 0.512821 FALSE NA NA NA NA NA MN908947.3 19516 T A 13 13 38 1 1 20 0.0714286 14 0.518519 FALSE NA NA NA NA NA MN908947.3 19518 G -TA 14 14 38 1 0 20 0.0714286 14 0.535714 FALSE NA NA NA NA NA MN908947.3 19548 A T 14 14 38 6 0 33 0.3 20 0.01188 FALSE NA NA NA NA NA MN908947.3 20268 A G 0 0 0 327 1 38 1 327 4.28941e-196 TRUE NA NA NA NA NA MN908947.3 21101 G +T 3288 3193 37 110 0 20 0.0331325 3320 5.69779e-11 TRUE NA NA NA NA NA MN908947.3 23403 A G 1 1 39 5964 5939 38 0.99933 5968 0 TRUE NA NA NA NA NA MN908947.3 28465 T A 178 13 38 44 44 32 0.198198 222 4.80414e-15 TRUE NA NA NA NA NA MN908947.3 28770 C T 148 141 36 1513 40 38 0.910897 1661 0 TRUE NA NA NA NA NA