Mercurial > repos > dfornika > get_primer_scheme_bedfiles

annotate get_primer_scheme_bedfiles.xml @ 1:871314e98eb7 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
author dfornika
date Wed, 18 Mar 2020 01:08:07 +0000
parents d0d633f1b1a9
children f546658a63f0
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d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents:
diff changeset
1 <tool id="get_primer_scheme_bedfiles" name="Get Primer Scheme .bed Files" version="0.1.0+galaxy0">
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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2 <description>Get Primer Scheme .bed File from primer_scheme_bedfiles tool data table</description>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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3 <requirements>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents:
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4 </requirements>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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5 <command detect_errors="exit_code"><![CDATA[
1
871314e98eb7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents: 0
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6 cp '${primer_scheme_bedfile.fields.path}' primer_scheme.bed
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d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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7 ]]></command>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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8 <inputs>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents:
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9 <param name="primer_scheme_bedfile" type="select" format="bed" label="Primer Scheme">
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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10 <options from_data_table="primer_scheme_bedfiles">
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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11 <validator type="no_options" message="No primer scheme .bed files are available" />
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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12 </options>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents:
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13 </param>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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14 </inputs>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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15 <outputs>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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16 <data name="primer_scheme_bedfile" format="bed" from_workdir="primer_scheme.bed" label="Primer Scheme" />
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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17 </outputs>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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18 <tests>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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19 </tests>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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20 <help><![CDATA[
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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21 ]]></help>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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22 <citations>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
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23 </citations>
d0d633f1b1a9 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/get_primer_scheme_bedfiles commit 1b705021d1f27450005e358c0c1cb9283b9f56f8-dirty"
dfornika
parents:
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24 </tool>