Mercurial > repos > dfornika > confindr

changeset 1:627b2e75b1ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/confindr/ commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"
author dfornika
date Fri, 31 Jan 2020 18:37:49 +0000
parents d43117b98027
children d2a5df8ada29
files confindr.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/confindr.xml	Fri Jan 31 18:28:41 2020 +0000
+++ b/confindr.xml	Fri Jan 31 18:37:49 2020 +0000
@@ -10,12 +10,12 @@
 
     <command detect_errors="exit_code"><![CDATA[
         #if str( $reads_input.reads_input_selector ) == "paired"
-          ln -s '$reads_input.reads_1' 'input/reads_R1.fastq.gz' &&
-          ln -s '$reads_input.reads_2' 'input/reads_R2.fastq.gz' &&
+          ln -s '$reads_input.reads_1' 'input/reads_R1.fastq' &&
+          ln -s '$reads_input.reads_2' 'input/reads_R2.fastq' &&
         #end if
         #if str( $reads_input.reads_input_selector ) == "paired_collection"
-          ln -s '$reads_input.reads.forward' 'input/reads_R1.fastq.gz' &&
-          ln -s '$reads_input.reads.reverse' 'input/reads_R2.fastq.gz' &&
+          ln -s '$reads_input.reads.forward' 'input/reads_R1.fastq' &&
+          ln -s '$reads_input.reads.reverse' 'input/reads_R2.fastq' &&
         #end if
         
         confindr.py 
--- a/macros.xml	Fri Jan 31 18:28:41 2020 +0000
+++ b/macros.xml	Fri Jan 31 18:37:49 2020 +0000
@@ -13,7 +13,7 @@
     <token name="@VERSION@">0.7.2</token>
 
     <token name="@INTYPES">
-        fastq.gz,fastqsanger.gz
+        fastq,fastqsanger
     </token>
 
     <xml name="citations">