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annotate cgview.xml @ 2:90a4e07dd055 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit c74272bb72948dfdff23e78a2d1e4955ac05d258-dirty
author dfornika
date Mon, 08 Jul 2019 20:58:05 -0400
parents d7e81eba876f
children 5542de6121ac
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d7e81eba876f planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit c74272bb72948dfdff23e78a2d1e4955ac05d258-dirty
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1 <tool id="cgview" name="cgview" version="1.0+galaxy0">
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2 <description>Circular Genome Viewer</description>
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3 <requirements>
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4 <requirement type="package" version="1.0">cgview</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code">
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7 <![CDATA[
2
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8 ln -s '${input}' input.xml &&
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9 cgview
2
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10 -i 'input.xml'
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11 -o '${output}'
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12 ]]>
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13 </command>
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14 <inputs>
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15 <param name="input" type="data" format="xml" label="Input" help=""/>
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16 </inputs>
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17 <outputs>
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18 <data name="output" format="png"/>
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19 </outputs>
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20 <tests>
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21 </tests>
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22 <help>
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23 </help>
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24 <citations>
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25 <citation type="bibtex">
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26 @article{
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27 stothard2004circular,
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28 title={Circular genome visualization and exploration using CGView},
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29 author={Stothard, Paul and Wishart, David S},
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30 journal={Bioinformatics},
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31 volume={21},
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32 number={4},
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33 pages={537--539},
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34 year={2004},
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35 publisher={Oxford University Press}
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36 }
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37 </citation>
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38 </citations>
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39 </tool>