Mercurial > repos > dfornika > blast_report

annotate blast_report.xml @ 8:71dd0b1d5511 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
author dfornika
date Thu, 12 Sep 2019 00:56:20 -0400
parents 848fbcaf21d6
children 2b4f30c6b50a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
1 <tool id="blast_report" name="BLAST report" force_history_refresh="true" version="1.1.0">
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
2 <description>Report on BLAST results</description>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
3 <command >
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
4 <![CDATA[
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
5 '$__tool_directory__/blast_report.py'
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
6 '${in_tab}'
6
e50d49d4130a planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
dfornika
parents: 5
diff changeset
7 '${tmpl.fields.path}'
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
8 '${out_html}'
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
9 '${out_tab}'
8
71dd0b1d5511 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
dfornika
parents: 7
diff changeset
10 -f '${filter_pident}:$filter_kws'
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
11 #if str($bins) == "None"
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
12 #pass
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
13 #else
6
e50d49d4130a planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
dfornika
parents: 5
diff changeset
14 -b "${bins.fields.path}"
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
15 #end if
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
16 #if $hsp_bool
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
17 -r
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
18 #end if
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
19 ]]>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
20 </command>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
21 <inputs>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
22 <param name="in_tab" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
23 <param name="tmpl" type="select" optional="false" label="Report template">
4
d6423655d2b5 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
dfornika
parents: 1
diff changeset
24 <options from_data_table="blast_report_templates">
d6423655d2b5 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
dfornika
parents: 1
diff changeset
25 <column name="value" index="0"/>
d6423655d2b5 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
dfornika
parents: 1
diff changeset
26 <column name="name" index="1"/>
7
848fbcaf21d6 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
dfornika
parents: 6
diff changeset
27 <column name="path" index="2"/>
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
28 </options>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
29 </param>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
30 <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
31 <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
32 <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes">
1
a56a5519d60a planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit bf63225facccd1b6fcf39681ee5fe0bc887b1695-dirty
dfornika
parents: 0
diff changeset
33 <options from_data_table="blast_report_bins">
4
d6423655d2b5 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
dfornika
parents: 1
diff changeset
34 <column name="value" index="0"/>
d6423655d2b5 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
dfornika
parents: 1
diff changeset
35 <column name="name" index="1"/>
7
848fbcaf21d6 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
dfornika
parents: 6
diff changeset
36 <column name="path" index="2"/>
0
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
37 </options>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
38 </param>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
39 <!--<repeat name="hist_bins" title="History database bins">
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
40 <param name="filter" type="data" format="csv" label="History database bin"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
41 </repeat>-->
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
42 <param name="hsp_bool" type="boolean" label="Throw out redundant hits?"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
43 <param name="tab_bool" type="boolean" label="Output tabular file?"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
44 </inputs>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
45 <outputs>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
46 <data name="out_html" format="html" label="$tool.name on data $in_tab.hid: report"/>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
47 <data name="out_tab" format="tabular" label="$tool.name on data $in_tab.hid: tabular results">
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
48 <filter> tab_bool </filter>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
49 </data>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
50 </outputs>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
51 <help>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
52 .. class:: infomark
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
53
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
54 **What it does**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
55
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
56 This tool produces a HTML report for each query in a tabular BLAST file.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
57
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
58 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
59
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
60 **Tabular BLAST results**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
61
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
62 One or more query's BLAST results in extended 26 column tabular format.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
63
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
64 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
65
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
66 **Report template**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
67
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
68 The report template dictates the format of the HTML report.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
69 Note that changing the template from the standard "Top 20 hits shown, toggle remainder" to "Euzby results shown first" causes
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
70 the order of the results in the HTML report and the tabular BLAST results (if outputted) to be inconsistent with each other.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
71
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
72 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
73
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
74 **Minimum percentage identity**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
75
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
76 Filter by percentage identity. This filter is applied before the description keyword filters.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
77
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
78 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
79
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
80 **Comma-separated list of description keyword filters**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
81
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
82 Filter by description keywords. Do not include spaces (unless your keyword is two words). These are applied
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
83 after the percentage identity filter.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
84
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
85 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
86
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
87 **Database bins**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
88
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
89 Bin the results by accession number into "database bins."
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
90
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
91 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
92
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
93 **Throw out redundant hits?**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
94
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
95 Only the first hit for any accession number will be reported.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
96
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
97 ----
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
98
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
99 **Output tabular BLAST results?**
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
100
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
101 This option produces a tabular BLAST file with the same results as those shown in the report.
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
102
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
103 </help>
18b097eb1a51 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 006cbba6513492f5a06b573c676400a2d464520b-dirty
dfornika
parents:
diff changeset
104 </tool>