Mercurial > repos > dfornika > augur
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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/augur commit a71ecf1b4a86227084935c6f60dfd130b7d0997b-dirty
| author | dfornika |
|---|---|
| date | Mon, 08 Apr 2019 13:27:08 -0400 |
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| children |
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inputfile = orig 5 x 8 - 7 d nthread = 1 nthreadpair = 1 nthreadtb = 1 ppenalty_ex = 0 stacksize: 8192 kb generating a scoring matrix for nucleotide (dist=200) ... done Gap Penalty = -1.53, +0.00, +0.00 Making a distance matrix .. 1 / 5 (thread 0) done. Constructing a UPGMA tree (efffree=0) ... 0 / 5 done. Progressive alignment 1/2... STEP 1 / 4 (thread 0) f STEP 2 / 4 (thread 0) d STEP 3 / 4 (thread 0) d STEP 4 / 4 (thread 0) d done. Making a distance matrix from msa.. 0 / 5 (thread 0) done. Constructing a UPGMA tree (efffree=1) ... 0 / 5 done. Progressive alignment 2/2... STEP 1 / 4 (thread 0) f STEP 2 / 4 (thread 0) d STEP 3 / 4 (thread 0) d STEP 4 / 4 (thread 0) d done. disttbfast (nuc) Version 7.407 alg=A, model=DNA200 (2), 1.53 (4.59), -0.00 (-0.00), noshift, amax=0.0 1 thread(s) Strategy: FFT-NS-2 (Fast but rough) Progressive method (guide trees were built 2 times.) If unsure which option to use, try 'mafft --auto input > output'. For more information, see 'mafft --help', 'mafft --man' and the mafft page. The default gap scoring scheme has been changed in version 7.110 (2013 Oct). It tends to insert more gaps into gap-rich regions than previous versions. To disable this change, add the --leavegappyregion option.