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diff vcfgenotypes.xml @ 0:a1a3b63d2af2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 12:32:49 -0500
parents
children 30963674e8fd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfgenotypes.xml	Mon Nov 09 12:32:49 2015 -0500
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+<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3">
+  <description>Convert numerical representation of genotypes to allelic</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"></expand>
+  <expand macro="stdio" />
+  <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="vcf_input" value="vcflib.vcf"/>
+      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
+    </test>
+    </tests>
+  <help>
+
+Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.
+
+----
+
+Vcfgenotypes @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>