Mercurial > repos > devteam > vcfgenotypes
comparison vcfgenotypes.xml @ 0:a1a3b63d2af2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
| author | devteam |
|---|---|
| date | Mon, 09 Nov 2015 12:32:49 -0500 |
| parents | |
| children | 30963674e8fd |
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| -1:000000000000 | 0:a1a3b63d2af2 |
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| 1 <tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3"> | |
| 2 <description>Convert numerical representation of genotypes to allelic</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"></expand> | |
| 7 <expand macro="stdio" /> | |
| 8 <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> | |
| 9 <inputs> | |
| 10 <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="tabular" name="out_file1" /> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="vcf_input" value="vcflib.vcf"/> | |
| 18 <output name="out_file1" file="vcfgenotypes-test1.tab"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help> | |
| 22 | |
| 23 Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. | |
| 24 | |
| 25 ---- | |
| 26 | |
| 27 Vcfgenotypes @IS_PART_OF_VCFLIB@ | |
| 28 </help> | |
| 29 <expand macro="citations" /> | |
| 30 </tool> |