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diff vcfcommonsamples.xml @ 0:1af6f51218b6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 12:31:04 -0500
parents
children 167d9cf0e88d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfcommonsamples.xml	Mon Nov 09 12:31:04 2015 -0500
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+<tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.3">
+  <description>Output records belonging to samples common between two datasets</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"></expand>
+  <expand macro="stdio" />
+  <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="First dataset"/>
+    <param format="vcf" name="input2" type="data" label="Second dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="vcflib.vcf"/>
+      <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
+      <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
+    </test>
+    </tests>
+  <help>
+
+Outputs each record in the first file, removing samples not present in the second.
+
+----
+
+Vcfcommonsamples @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>